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Journal articleIbarra-Chávez R, Haag AF, Dorado-Morales P, et al., 2020,
Rebooting synthetic phage-inducible chromosomal islands: one method to forge them all
, BioDesign Research, Vol: 2020, Pages: 1-14Phage-inducible chromosomal islands (PICIs) are a widespread family of mobile genetic elements, which have an important role in bacterial pathogenesis. These elements mobilize among bacterial species at extremely high frequencies, representing an attractive tool for the delivery of synthetic genes. However, tools for their genetic manipulation are limited and timing consuming. Here, we have adapted a synthetic biology approach for rapidly editing of PICIs in Saccharomyces cerevisiae based on their ability to excise and integrate into the bacterial chromosome of their cognate host species. As proof of concept, we engineered several PICIs from Staphylococcus aureus and Escherichia coli and validated this methodology for the study of the biology of these elements by generating multiple and simultaneous mutations in different PICI genes. For biotechnological purposes, we also synthetically constructed PICIs as Trojan horses to deliver different CRISPR-Cas9 systems designed to either cure plasmids or eliminate cells carrying the targeted genes. Our results demonstrate that the strategy developed here can be employed universally to study PICIs and enable new approaches for diagnosis and treatment of bacterial diseases.
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Journal articleSheppard D, Berry J-L, Denise R, et al., 2020,
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
, Journal of Biological Chemistry, Vol: 295, Pages: 6594-6604, ISSN: 0021-9258<jats:p>Type IV filaments (T4F), which are helical assemblies of type IV pilins, constitute a superfamily of filamentous nanomachines virtually ubiquitous in prokaryotes that mediate a wide variety of functions. The competence (Com) pilus is a widespread T4F, mediating DNA uptake (the first step in natural transformation) in bacteria with one membrane (monoderms), an important mechanism of horizontal gene transfer. Here, we report the results of genomic, phylogenetic, and structural analyses of ComGC, the major pilin subunit of Com pili. By performing a global comparative analysis, we show that Com pili genes are virtually ubiquitous in Bacilli, a major monoderm class of Firmicutes. This also revealed that ComGC displays extensive sequence conservation, defining a monophyletic group among type IV pilins. We further report ComGC solution structures from two naturally competent human pathogens, <jats:italic>Streptococcus sanguinis</jats:italic> (ComGC<jats:sub>SS</jats:sub>) and <jats:italic>Streptococcus pneumoniae</jats:italic> (ComGC<jats:sub>SP</jats:sub>), revealing that this pilin displays extensive structural conservation. Strikingly, ComGC<jats:sub>SS</jats:sub> and ComGC<jats:sub>SP</jats:sub> exhibit a novel type IV pilin fold that is purely helical. Results from homology modeling analyses suggest that the unusual structure of ComGC is compatible with helical filament assembly. Because ComGC displays such a widespread distribution, these results have implications for hundreds of monoderm species.</jats:p>
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Journal articleGiraud-Gatineau A, Coya JM, Maure A, et al., 2020,
The antibiotic bedaquiline activates host macrophage innate immune resistance to bacterial infection
, eLife, Vol: 9, ISSN: 2050-084XAntibiotics are widely used in the treatment of bacterial infections. Although known for their microbicidal activity, antibiotics may also interfere with the host's immune system. Here, we analyzed the effects of bedaquiline (BDQ), an inhibitor of the mycobacterial ATP synthase, on human macrophages. Genome-wide gene expression analysis revealed that BDQ reprogramed cells into potent bactericidal phagocytes. We found that 579 and 1,495 genes were respectively differentially expressed in naive- and M. tuberculosis-infected macrophages incubated with the drug, with an over-representation of lysosome-associated genes. BDQ treatment triggered a variety of antimicrobial defense mechanisms, including phagosome-lysosome fusion, and autophagy. These effects were associated with activation of transcription factor EB, involved in the transcription of lysosomal genes, resulting in enhanced intracellular killing of different bacterial species that were naturally insensitive to BDQ. Thus, BDQ could be used as a host-directed therapy against a wide range of bacterial infections.
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Journal articleChua F, Armstrong-James D, Desai SR, et al., 2020,
The role of CT in case ascertainment and management of COVID-19 pneumonia in the UK: insights from high-incidence regions
, The Lancet Respiratory Medicine, Vol: 8, Pages: 438-440, ISSN: 2213-2600 -
Conference paperMartinez-Gili L, McDonald JA, Liu Z, et al., 2020,
644 identification of novel changes in microbially-derived metabolites after fecal microbiota transplant for recurrent clostridioides difficile infection
, Publisher: Elsevier BV, Pages: S-138-S-139, ISSN: 0016-5085 -
Conference paperGhani R, Mullish BH, McDonald JA, et al., 2020,
1144 FECAL MICROBIOTA TRANSPLANT FOR MULTI-DRUG RESISTANT ORGANISMS: IMPROVED CLINICAL OUTCOMES BEYOND INTESTINAL DECOLONISATION
, Publisher: Elsevier BV, ISSN: 0016-5085 -
Journal articleBlanco JM, Liu Z, Selvarajah U, et al., 2020,
Sa1923 identification of new associations between psoriatic arthritis and the gut microbiota, a phenomic study
, Gastroenterology, Vol: 158, Pages: S-481, ISSN: 0016-5085 -
Journal articleAllegretti JR, Hurtado J, Carrellas M, et al., 2020,
121 ULCERATIVE COLITIS PATIENTS ACHEIVE MORE ROBUST ENGRAFTMENT COMPARED TO PATIENTS WITH CROHN'S DISEASE AFTER FECAL MICROBIOTA TRANSPLANTATION FOR THE TREATMENT OF RECURRENT C. DIFFICLE INFECTION
, Gastroenterology, Vol: 158, Pages: S-22, ISSN: 0016-5085 -
Journal articleChorev DS, Tang H, Rouse SL, et al., 2020,
The use of sonicated lipid vesicles for mass spectrometry of membrane protein complexes
, NATURE PROTOCOLS, Vol: 15, Pages: 1690-1706, ISSN: 1754-2189- Author Web Link
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- Citations: 25
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Journal articleArmstrong-James D, Koh M, Ostermann M, et al., 2020,
Optimal management of acute kidney injury in critically ill patients with invasive fungal infections being treated with liposomal amphotericin B
, BMJ CASE REPORTS, Vol: 13- Author Web Link
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- Citations: 7
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