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Journal articleHarding EC, Ba W, Zahir R, et al., 2021,
Nitric oxide synthase neurons in the preoptic hypothalamus are NREM and REM sleep-active and lower body temperature
, Frontiers in Neuroscience, Vol: 15, ISSN: 1662-453XWhen mice are exposed to external warmth, nitric oxide synthase (NOS1) neurons in the median and medial preoptic (MnPO/MPO) hypothalamus induce sleep and concomitant body cooling. However, how these neurons regulate baseline sleep and body temperature is unknown. Using calcium photometry, we show that NOS1 neurons in MnPO/MPO are predominantly NREM and REM active, especially at the boundary of wake to NREM transitions, and in the later parts of REM bouts, with lower activity during wakefulness. In addition to releasing nitric oxide, NOS1 neurons in MnPO/MPO can release GABA, glutamate and peptides. We expressed tetanus-toxin light-chain in MnPO/MPO NOS1 cells to reduce vesicular release of transmitters. This induced changes in sleep structure: over 24 h, mice had less NREM sleep in their dark (active) phase, and more NREM sleep in their light (sleep) phase. REM sleep episodes in the dark phase were longer, and there were fewer REM transitions between other vigilance states. REM sleep had less theta power. Mice with synaptically blocked MnPO/MPO NOS1 neurons were also warmer than control mice at the dark-light transition (ZT0), as well as during the dark phase siesta (ZT16-20), where there is usually a body temperature dip. Also, at this siesta point of cooled body temperature, mice usually have more NREM, but mice with synaptically blocked MnPO/MPO NOS1 cells showed reduced NREM sleep at this time. Overall, MnPO/MPO NOS1 neurons promote both NREM and REM sleep and contribute to chronically lowering body temperature, particularly at transitions where the mice normally enter NREM sleep.
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Journal articleAhmadi N, Constandinou T, Bouganis C, 2021,
Inferring entire spiking activity from local field potentials
, Scientific Reports, Vol: 11, Pages: 1-13, ISSN: 2045-2322Extracellular recordings are typically analysed by separating them into two distinct signals: local field potentials (LFPs) andspikes. Previous studies have shown that spikes, in the form of single-unit activity (SUA) or multiunit activity (MUA), can beinferred solely from LFPs with moderately good accuracy. SUA and MUA are typically extracted via threshold-based techniquewhich may not be reliable when the recordings exhibit a low signal-to-noise ratio (SNR). Another type of spiking activity, referredto as entire spiking activity (ESA), can be extracted by a threshold-less, fast, and automated technique and has led to betterperformance in several tasks. However, its relationship with the LFPs has not been investigated. In this study, we aim toaddress this issue by inferring ESA from LFPs intracortically recorded from the motor cortex area of three monkeys performingdifferent tasks. Results from long-term recording sessions and across subjects revealed that ESA can be inferred from LFPswith good accuracy. On average, the inference performance of ESA was consistently and significantly higher than those of SUAand MUA. In addition, local motor potential (LMP) was found to be the most predictive feature. The overall results indicate thatLFPs contain substantial information about spiking activity, particularly ESA. This could be useful for understanding LFP-spikerelationship and for the development of LFP-based BMIs.
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Conference paperAntoniadis DD, Feng P, Mifsud A, et al., 2021,
Open-source memory compiler for automatic RRAM generation and verification
, 2021 IEEE International Midwest Symposium on Circuits and Systems (MWSCAS), Publisher: IEEE, Pages: 97-100The lack of open-source memory compilers in academia typically causes significant delays in research and design implementations. This paper presents an open-source memory compiler that is directly integrated within the Cadence Virtuoso environment using physical verification tools provided by Mentor Graphics (Calibre). It facilitates the entire memory generation process from netlist generation to layout implementation, and physical implementation verification. To the best of our knowledge, this is the first open-source memory compiler that has been developed specifically to automate Resistive Random Access Memory (RRAM) generation. RRAM holds the promise of achieving high speed, high density and non-volatility. A novel RRAM architecture, additionally is proposed, and a number of generated RRAM arrays are evaluated to identify their worst case control line parasitics and worst case settling time across the memristors of their cells. The total capacitance of lines SEL, N and P is 5.83 fF/cell, 3.31 fF/cell and 2.48 fF/cell respectively, while the total calculated resistance for SEL is 1.28 Ω/cell and 0.14 Ω/cell for both N and P lines.
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Journal articleFirfilionis D, Hutchings F, Tamadoni R, et al., 2021,
A closed-loop optogenetic platform
, Frontiers in Neuroscience, Vol: 15, Pages: 1-10, ISSN: 1662-453XNeuromodulation is an established treatment for numerous neurological conditions, but to expand the therapeutic scope there is a need to improve the spatial, temporal and cell-type specificity of stimulation. Optogenetics is a promising area of current research, enabling optical stimulation of genetically-defined cell types without interfering with concurrent electrical recording for closed-loop control of neural activity. We are developing an open-source system to provide a platform for closed-loop optogenetic neuromodulation, incorporating custom integrated circuitry for recording and stimulation, real-time closed-loop algorithms running on a microcontroller and experimental control via a PC interface. We include commercial components to validate performance, with the ultimate aim of translating this approach to humans. In the meantime our system is flexible and expandable for use in a variety of preclinical neuroscientific applications. The platform consists of a Controlling Abnormal Network Dynamics using Optogenetics (CANDO) Control System (CS) that interfaces with up to four CANDO headstages responsible for electrical recording and optical stimulation through custom CANDO LED optrodes. Control of the hardware, inbuilt algorithms and data acquisition is enabled via the CANDO GUI (Graphical User Interface). Here we describe the design and implementation of this system, and demonstrate how it can be used to modulate neuronal oscillations in vitro and in vivo.
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Journal articleConstandinou TG, Tang KT, Wang G, 2021,
Editorial special section on selected papers from ISICAS 2020
, IEEE Transactions on Biomedical Circuits and Systems, Vol: 15, Pages: 646-646, ISSN: 1932-4545 -
Journal articleSzostak KM, Keshavarz M, Constandinou T, 2021,
Hermetic chip-scale packaging using Au:Sn eutectic bonding for implantable devices
, Journal of Micromechanics and Microengineering, Vol: 31, Pages: 1-13, ISSN: 0960-1317Advancements in miniaturisation and new capabilities of implantable devices impose a need for the development of compact, hermetic, and CMOS-compatible micro packaging methods. Gold-tin-based eutectic bonding presents the potential for achieving low-footprint seals with low permeability to moisture at process temperatures below 350 compfnC. This work describes a method for the deposition of Au:Sn eutectic alloy frames by sequential electroplating from commercially available solutions. Frames were bonded on the chip-level in the process of eutectic bonding. Bond quality was characterised through shear force measurements, scanning electron microscopy, visual inspection, and immersion tests. Characterisation of seals geometry, solder thickness, and bonding process parameters was evaluated, along with toxicity assessment of bonding layers to the human fibroblast cells. With a successful bond yield of over 70% and no cytotoxic effect, Au:Sn eutectic bonding appears as a suitable method for the protection of integrated circuitry in implantable applications.
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Conference paperChen Z, Bannon A, Rapeaux A, et al., 2021,
Towards robust, unobtrusive sensing of respiration using UWB impulse Radar for the care of people living with dementia
, 10th International IEEE-EMBS Conference on Neural Engineering (NER), Publisher: IEEE, Pages: 866-871, ISSN: 1948-3546The unobtrusive monitoring of vital signals and behaviour can be used to gather intelligence to support the care of people living with dementia. This can provide insights into the person's wellbeing and the neurogenerative process, as well as enable them to continue to live safely at home, thereby improving their quality of life. Within this context, this study investigated the deployability of non-contact respiration rate (RR) measurement based on an Ultra-Wideband (UWB) radar System-on-Chip (SoC). An algorithm was developed to simultaneously and continuously extract the respiration signal, together with the confidence level of the respiration signal and the target position, without needing any prior calibration. The radar-measured RR results were compared to the RR results obtained from a ground truth measure based on the breathing sound, and the error rates were within 8% with a mean value of 2.5%. The target localisation results match to the radar-to-chest distances with a mean error rate of 5.8%. The tested measurement range was up to 5m. The results suggest that the algorithm could perform sufficiently well in non-contact stationary respiration rate detection.
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Conference paperSavolainen OW, Constandinou TG, 2021,
Investigating the effects of macaque primary motor cortex multi-unit activity binning period on behavioural decoding performance
, 10th International IEEE-EMBS Conference on Neural Engineering (NER), Publisher: IEEE, Pages: 436-439, ISSN: 1948-3546This paper investigates the relationship between Multi-Unit Activity (MUA) Binning Period (BP) and Brain-Computer Interface (BCI) decoding performance using Long-Short Term Memory decoders. The motivation is to determine whether lossy compression of MUA via increasing BP has any adverse consequences for BCI Behavioral Decoding Performance (BDP). The Neural data originates from intracortical recordings from Macaque Primary Motor cortex. The BDP is measured by the Pearson correlation r between the observed and predicted velocity of the subject's X- Y hand coordinates in reaching tasks. The results suggest a statistically significant but slight linear relationship between increasing MUA BP and decreasing BDP. For example, when using a 100 ms moving average window, increasing the BP by 10 ms on average reduces the BDP r by approximately 0.85%. This relationship may be due to the reduced number of training examples, or due to the loss of Behavioral information because of reduced MUA temporal resolution.
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Conference paperZhang Z, Constandinou TG, 2021,
A robust and automated algorithm that uses single-channel spike sorting to label multi-channel Neuropixels data
, 10th International IEEE-EMBS Conference on Neural Engineering (NER), Publisher: IEEE, Pages: 783-787, ISSN: 1948-3546This paper describes preliminary work towards an automated algorithm for labelling Neuropixel data that exploits the fact that adjacent recording sites are spatially oversampled. This is achieved by combining classical single channel spike sorting with spatial spike grouping, resulting in an improvement in both accuracy and robustness. This is additionally complemented by an automated method for channel selection that determines which channels contain high quality data. The algorithm has been applied to a freely accessible dataset, produced by Cortex Lab, UCL. This has been evaluated to have a accuracy of over 77% compared to a manually curated ground truth.
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Journal articleZhang Z, Constandinou T, 2021,
Adaptive spike detection and hardware optimization towards autonomous, high-channel-count BMIs
, Journal of Neuroscience Methods, Vol: 354, ISSN: 0165-0270BackgroundThe progress in microtechnology has enabled an exponential trend in the number of neurons that can be simultaneously recorded. The data bandwidth requirement is however increasing with channel count. The vast majority of experimental work involving electrophysiology stores the raw data and then processes this offline; to detect the underlying spike events. Emerging applications however require new methods for local, real-time processing.New MethodsWe have developed an adaptive, low complexity spike detection algorithm that combines three novel components for: (1) removing the local field potentials; (2) enhancing the signal-to-noise ratio; and (3) computing an adaptive threshold. The proposed algorithm has been optimised for hardware implementation (i.e. minimising computations, translating to a fixed-point implementation), and demonstrated on low-power embedded targets.Main resultsThe algorithm has been validated on both synthetic datasets and real recordings yielding a detection sensitivity of up to 90%. The initial hardware implementation using an off-the-shelf embedded platform demonstrated a memory requirement of less than 0.1 kb ROM and 3 kb program flash, consuming an average power of 130 μW.Comparison with Existing MethodsThe method presented has the advantages over other approaches, that it allows spike events to be robustly detected in real-time from neural activity in a completely autonomous way, without the need for any calibration, and can be implemented with low hardware resources.ConclusionThe proposed method can detect spikes effectively and adaptively. It alleviates the need for re-calibration, which is critical towards achieving a viable BMI, and more so with future ‘high bandwidth’ systems’ targeting 1000s of channels.
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Journal articleAhmadi N, Constandinou TG, Bouganis C-S, 2021,
Robust and accurate decoding of hand kinematics from entire spiking activity using deep learning
, Journal of Neural Engineering, Vol: 18, Pages: 1-23, ISSN: 1741-2552Objective. Brain–machine interfaces (BMIs) seek to restore lost motor functions in individuals with neurological disorders by enabling them to control external devices directly with their thoughts. This work aims to improve robustness and decoding accuracy that currently become major challenges in the clinical translation of intracortical BMIs. Approach. We propose entire spiking activity (ESA)—an envelope of spiking activity that can be extracted by a simple, threshold-less, and automated technique—as the input signal. We couple ESA with deep learning-based decoding algorithm that uses quasi-recurrent neural network (QRNN) architecture. We evaluate comprehensively the performance of ESA-driven QRNN decoder for decoding hand kinematics from neural signals chronically recorded from the primary motor cortex area of three non-human primates performing different tasks. Main results. Our proposed method yields consistently higher decoding performance than any other combinations of the input signal and decoding algorithm previously reported across long-term recording sessions. It can sustain high decoding performance even when removing spikes from the raw signals, when using the different number of channels, and when using a smaller amount of training data. Significance. Overall results demonstrate exceptionally high decoding accuracy and chronic robustness, which is highly desirable given it is an unresolved challenge in BMIs.
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Journal articleAhmadi N, Constandinou T, Bouganis C-S, 2021,
Impact of referencing scheme on decoding performance of LFP-based brain-machine interface
, Journal of Neural Engineering, Vol: 18, ISSN: 1741-2552OBJECTIVE: There has recently been an increasing interest in local field potential (LFP) for brain-machine interface (BMI) applications due to its desirable properties (signal stability and low bandwidth). LFP is typically recorded with respect to a single unipolar reference which is susceptible to common noise. Several referencing schemes have been proposed to eliminate the common noise, such as bipolar reference, current source density (CSD), and common average reference (CAR). However, to date, there have not been any studies to investigate the impact of these referencing schemes on decoding performance of LFP-based BMIs. APPROACH: To address this issue, we comprehensively examined the impact of different referencing schemes and LFP features on the performance of hand kinematic decoding using a deep learning method. We used LFPs chronically recorded from the motor cortex area of a monkey while performing reaching tasks. MAIN RESULTS: Experimental results revealed that local motor potential (LMP) emerged as the most informative feature regardless of the referencing schemes. Using LMP as the feature, CAR was found to yield consistently better decoding performance than other referencing schemes over long-term recording sessions. Significance Overall, our results suggest the potential use of LMP coupled with CAR for enhancing the decoding performance of LFP-based BMIs.
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Conference paperFeng P, Constandinou TG, 2021,
Autonomous Wireless System for Robust and Efficient Inductive Power Transmission to Multi-Node Implants
<jats:title>Abstract</jats:title><jats:p>A number of recent and current efforts in brain machine interfaces are developing millimetre-sized wireless implants that achieve scalability in the number of recording channels by deploying a distributed ‘swarm’ of devices. This trend poses two key challenges for the wireless power transfer: (1) the system as a whole needs to provide sufficient power to all devices regardless of their position and orientation; (2) each device needs to maintain a stable supply voltage autonomously. This work proposes two novel strategies towards addressing these challenges: a scalable resonator array to enhance inductive networks; and a self-regulated power management circuit for use in each independent mm-scale wireless device. The proposed passive 2-tier resonant array is shown to achieve an 11.9% average power transfer efficiency, with ultra-low variability of 1.77% across the network.</jats:p><jats:p>The self-regulated power management unit then monitors and autonomously adjusts the supply voltage of each device to lie in the range between 1.7 V-1.9 V, providing both low-voltage and over-voltage protection.</jats:p>
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Conference paperStanchieri GDP, Battisti G, De Marcellis A, et al., 2021,
A New Multilevel Pulsed Modulation Technique for Low Power High Data Rate Optical Biotelemetry
, IEEE Biomedical Circuits and Systems Conference (IEEE BioCAS), Publisher: IEEE -
Conference paperYilmaz S, Constandinou TG, Carrara S, 2021,
Integrated Potentiostat Design for Neurotransmitter Detection in Wireless Implants
, IEEE International Midwest Symposium on Circuits and Systems (MWSCAS), Publisher: IEEE, Pages: 848-852, ISSN: 1548-3746 -
Journal articleTringali D, Haci D, Mazza F, et al., 2021,
Eye Accommodation Sensing for Adaptive Focus Adjustment
, 2021 43RD ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE & BIOLOGY SOCIETY (EMBC), Pages: 7460-7464, ISSN: 1557-170X -
Journal articleDel Bono F, Rapeaux A, Demarchi D, et al., 2021,
Translating node of Ranvier currents to extraneural electrical fields: a flexible FEM modeling approach
, 2021 43RD ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE & BIOLOGY SOCIETY (EMBC), Pages: 4268-4272, ISSN: 1557-170X -
Journal articleBannon A, Rapeaux A, Constandinou TG, 2021,
Tiresias: A low-cost networked UWB radar system for in-home monitoring of dementia patients
, 2021 43RD ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE & BIOLOGY SOCIETY (EMBC), Pages: 7068-7072, ISSN: 1557-170X- Author Web Link
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Conference paperToth R, Zamora M, Ottaway J, et al., 2020,
DyNeuMo Mk-2: an investigational circadian-locked neuromodulator with responsive stimulation for applied chronobiology
, 2020 IEEE International Conference on Systems, Man, and Cybernetics (SMC), Publisher: IEEE, Pages: 3433-3440, ISSN: 0884-3627Deep brain stimulation (DBS) for Parkinson's disease, essential tremor and epilepsy is an established palliative treatment. DBS uses electrical neuromodulation to suppress symptoms. Most current systems provide a continuous pattern of fixed stimulation, with clinical follow-ups to refine settings constrained to normal office hours. An issue with this management strategy is that the impact of stimulation on circadian, i.e. sleep-wake, rhythms is not fully considered; either in the device design or in the clinical follow-up. Since devices can be implanted in brain targets that couple into the reticular activating network, impact on wakefulness and sleep can be significant. This issue will likely grow as new targets are explored, with the potential to create entraining signals that are uncoupled from environmental influences. To address this issue, we have designed a new brain-machine-interface for DBS that combines a slow-adaptive circadian-based stimulation pattern with a fast-acting pathway for responsive stimulation, demonstrated here for seizure management. In preparation for first-in-human research trials to explore the utility of multi-timescale automated adaptive algorithms, design and prototyping was carried out in line with ISO risk management standards, ensuring patient safety. The ultimate aim is to account for chronobiology within the algorithms embedded in brain-machine-interfaces and in neuromodulation technology more broadly.
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Journal articleLuo J, Firflionis D, Turnball M, et al., 2020,
The neural engine: a reprogrammable low power platform for closed-loop optogenetics
, IEEE Transactions on Biomedical Engineering, Vol: 67, Pages: 3004-3015, ISSN: 0018-9294Brain-machine Interfaces (BMI) hold great potential for treating neurological disorders such as epilepsy. Technological progress is allowing for a shift from open-loop, pacemaker-class, intervention towards fully closed-loop neural control systems. Low power programmable processing systems are therefore required which can operate within the thermal window of 2° C for medical implants and maintain long battery life. In this work, we developed a low power neural engine with an optimized set of algorithms which can operate under a power cycling domain. By integrating with custom designed brain implant chip, we have demonstrated the operational applicability to the closed-loop modulating neural activities in in-vitro brain tissues: the local field potentials can be modulated at required central frequency ranges. Also, both a freely-moving non-human primate (24-hour) and a rodent (1-hour) in-vivo experiments were performed to show system long-term recording performance. The overall system consumes only 2.93mA during operation with a biological recording frequency 50Hz sampling rate (the lifespan is approximately 56 hours). A library of algorithms has been implemented in terms of detection, suppression and optical intervention to allow for exploratory applications in different neurological disorders. Thermal experiments demonstrated that operation creates minimal heating as well as battery performance exceeding 24 hours on a freely moving rodent. Therefore, this technology shows great capabilities for both neuroscience in-vitro/in-vivo applications and medical implantable processing units.
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