Code and Resources
From papers
mtFRC: Depth-dependent resolution quantification of image features in 3D fluorescence microscopy
The mtFRC software is available as an ImageJ plugin on GitHub.
Next generation in vivo optical imaging with short-wave infrared quantum dots
Bruns O.T., Bischof T.S., Harris D.K., Shi Y., Riedemann L., Bartelt A., Jaworski F.B., Franke D., Carr J.A., Rowlands C.J., Wilson M.W.B., Chen O., Wei H., Hwang G.W., Montana D., Coropceanu I., Kloepper J., Heeren J., So P.T.C., Fukumura D., Jensen K.F., Jain R.K. and Bawendi M.G.: ‘Next generation in vivo optical imaging with short-wave infrared quantum dots’, Nature Biomedical Engineering, 1:0056, 2017
The paper can be found here.
The code is available on GitHub.
Objective, comparative assessment of the penetration depth of temporal-focusing microscopy for imaging various organs
Rowlands C.J., Bruns O.T., Bawendi M.G and So P.T.C.: ‘Objective, comparative assessment of the penetration depth of temporal-focusing microscopy for imaging various organs’, Journal of Biomedical Optics, 20(6):061107, 2015
The paper can be found here.
I've not managed to figure out how to host code on an Imperial server yet, so until I do, you're just going to have to ask nicely.
Denoising of Spectra With No User Input: A Spline-Smoothing Algorithm
Rowlands C.J. and Elliott S.R.: 'Denoising of Spectra With No User Input: A Spline-Smoothing Algorithm', Journal of Raman Spectroscopy, 42(3):370-376, 2011
The paper can be found here.
I don't know how to host code on Imperial College servers yet, so in the meantime you'll just have to ask nicely.
Robust Automated Algorithm for Baseline Subtraction in Spectra
Rowlands C.J. and Elliott S.R.: 'Robust Automated Algorithm for Baseline Subtraction in Spectra ', Journal of Raman Spectroscopy, 42(3):363-369, 2011
This paper can be found here.
I don't know how to host code on Imperial College servers, so in the meantime you'll just have to ask nicely.
Improved Blind-Source Separation for Spectra
Rowlands C.J. and Elliott S.R.: 'Improved Blind-Source Separation for Spectra', Journal of Raman Spectroscopy, 42(9):1761-1768, 2011
The paper can be found here.
I don't yet know how to host code on Imperial College servers, so in the meantime you'll just have to ask nicely.
A method for assessing the spatiotemporal resolution of Structured Illumination Microscopy (SIM)
DIRECT
Thank you for your interest; we are collating the software and data for this paper so until we get it uploaded, please contact us directly to get a copy.
Other resources
Removing fixed-pattern noise in some sCMOS cameras
This hasn't been published yet, but if you ask nicely you can probably have a copy of the code as long as you don't share it until after the publication.